Annotation of co-expression genes

PH01000343G0880's details annotation

1.Annotation

ICBR annotation: amino acid kinase, putative

Blast result AT3G57560 : 2.00E-110
Blast annotation: N-acetyl-l-glutamate kinase

2.Location

Scaffold: PH01000343
Strand: +

RegionStartEnd
gene624176625579
mRNA624176625579
exon624176625579
CDS624428625459

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00696.27AA_kinase82319

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Arginine and proline metabolismacetylglutamate/acetylaminoadipate kinase[EC:2.7.2.8;EC:2.7.2.-]ko00330K00930

10.Gene Ontology

GO AccessionGO Annotation
GO:0003991acetylglutamate kinase activity
GO:0004349glutamate 5-kinase activity
GO:0005737cytoplasm
GO:0006526arginine biosynthetic process
GO:0006561proline biosynthetic process
GO:0008652cellular amino acid biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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