PH01000346G0160's details annotation
1.Annotation
ICBR annotation: transcriptional corepressor LEUNIG, putative, expressed
Blast result AT4G32551 : 6.00E-173
Blast annotation: LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
2.Location
Scaffold: PH01000346
Strand: -
| Region | Start | End |
| gene | 119401 | 134244 |
| mRNA | 119401 | 134244 |
| exon | 119401 | 120945 |
| exon | 121532 | 121651 |
| exon | 121750 | 121914 |
| exon | 122053 | 122178 |
| exon | 122240 | 122367 |
| exon | 122761 | 122878 |
| exon | 124542 | 124772 |
| exon | 125283 | 125501 |
| exon | 127440 | 127739 |
| exon | 129352 | 129420 |
| exon | 129841 | 129928 |
| exon | 131036 | 131121 |
| exon | 131228 | 131650 |
| exon | 132226 | 132335 |
| exon | 133242 | 134244 |
| CDS | 120508 | 120945 |
| CDS | 121532 | 121651 |
| CDS | 121750 | 121914 |
| CDS | 122053 | 122178 |
| CDS | 122240 | 122367 |
| CDS | 122761 | 122878 |
| CDS | 124542 | 124772 |
| CDS | 125283 | 125501 |
| CDS | 127440 | 127739 |
| CDS | 129352 | 129420 |
| CDS | 129841 | 129928 |
| CDS | 131036 | 131121 |
| CDS | 131228 | 131650 |
| CDS | 132226 | 132335 |
| CDS | 133242 | 133575 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | LUG |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 676 | 698 |
| PF00400.31 | WD40 | 713 | 744 |
| PF00400.31 | WD40 | 749 | 784 |
| PF00400.31 | WD40 | 834 | 869 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.