PH01000346G0710's details annotation
1.Annotation
ICBR annotation: acetyltransferase, GNAT family, putative, expressed
Blast result AT5G11340 : 5.20E-67
Blast annotation: Acyl-CoA N-acyltransferases (NAT) superfamily protein
2.Location
Scaffold: PH01000346
Strand: +
| Region | Start | End |
| gene | 590755 | 594281 |
| mRNA | 590755 | 594281 |
| exon | 590755 | 591196 |
| exon | 591677 | 591799 |
| exon | 593522 | 594281 |
| CDS | 591010 | 591196 |
| CDS | 591677 | 591799 |
| CDS | 593522 | 593739 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Pseudo ARR-B Transcription_Regulator(from iTAK) protein import into mitochondrial inner membrane, transcription, DNA-dependent, nucleus, IWS1 Transcription_Regulator(from iTAK) GNAT Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GNAT |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00583.24 | Acetyltransf_1 | 60 | 143 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008080 | N-acetyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.