PH01000347G0470's details annotation
1.Annotation
ICBR annotation: membrane related protein CP5, putative, expressed
Blast result AT1G64720 : 2.00E-110
Blast annotation: Polyketide cyclase/dehydrase and lipid transport superfamily protein
2.Location
Scaffold: PH01000347
Strand: +
| Region | Start | End |
| gene | 255197 | 261141 |
| mRNA | 255197 | 261141 |
| exon | 255197 | 257946 |
| exon | 258043 | 258225 |
| exon | 258312 | 258395 |
| exon | 259138 | 259163 |
| exon | 259282 | 259348 |
| exon | 259766 | 259813 |
| exon | 259993 | 260074 |
| exon | 260267 | 261141 |
| CDS | 257410 | 257946 |
| CDS | 258043 | 258225 |
| CDS | 258312 | 258395 |
| CDS | 259138 | 259163 |
| CDS | 259282 | 259348 |
| CDS | 259766 | 259813 |
| CDS | 259993 | 260074 |
| CDS | 260267 | 260700 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.