PH01000348G0920's details annotation
1.Annotation
ICBR annotation: phosphoribosyl transferase, putative, expressed
Blast result AT3G53900 : 7.80E-43
Blast annotation: uracil phosphoribosyltransferase
2.Location
Scaffold: PH01000348
Strand: -
| Region | Start | End |
| gene | 544981 | 548461 |
| mRNA | 544981 | 548461 |
| exon | 544981 | 545190 |
| exon | 545275 | 545356 |
| exon | 545445 | 545522 |
| exon | 545906 | 545964 |
| exon | 546199 | 548461 |
| CDS | 545162 | 545190 |
| CDS | 545275 | 545356 |
| CDS | 545445 | 545522 |
| CDS | 545906 | 545964 |
| CDS | 546199 | 546391 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14681.5 | UPRTase | 41 | 139 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pyrimidine metabolism | uracil phosphoribosyltransferase [EC:2.4.2.9] | ko00240 | K00761 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.