PH01000349G1020's details annotation
1.Annotation
ICBR annotation: FAD binding domain of DNA photolyase domain containing protein, expressed
Blast result AT4G08920 : 0.00E+00
Blast annotation: cryptochrome 1
2.Location
Scaffold: PH01000349
Strand: -
| Region | Start | End |
| gene | 648046 | 652126 |
| mRNA | 648046 | 652126 |
| exon | 648046 | 649090 |
| exon | 649194 | 649900 |
| exon | 650417 | 650635 |
| exon | 651396 | 652126 |
| CDS | 648272 | 649090 |
| CDS | 649194 | 649900 |
| CDS | 650417 | 650635 |
| CDS | 651396 | 651744 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001174 | arsenite transmembrane transporter activity, arsenite_transport DNA photolyase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00875.17 | DNA_photolyase | 18 | 177 |
| PF03441.13 | FAD_binding_7 | 295 | 490 |
| PF12546.7 | Cryptochrome_C | 522 | 643 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003913 | DNA photolyase activity |
| GO:0006281 | DNA repair |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.