PH01000352G0040's details annotation
1.Annotation
ICBR annotation: aminotransferase, classes I and II, domain containing protein, expressed
Blast result AT5G51690 : 2.00E-137
Blast annotation: 1-amino-cyclopropane-1-carboxylate synthase 12
2.Location
Scaffold: PH01000352
Strand: +
| Region | Start | End |
| gene | 19217 | 24133 |
| mRNA | 19217 | 24133 |
| exon | 19217 | 21056 |
| exon | 22928 | 23088 |
| exon | 23178 | 24133 |
| CDS | 20709 | 21056 |
| CDS | 22928 | 23088 |
| CDS | 23178 | 24036 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 115 | 444 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009058 | biosynthetic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.