PH01000352G0880's details annotation
1.Annotation
ICBR annotation: 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
Blast result AT2G45300 : 0.00E+00
Blast annotation: RNA 3-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta
2.Location
Scaffold: PH01000352
Strand: +
| Region | Start | End |
| gene | 615780 | 621857 |
| mRNA | 615780 | 621857 |
| exon | 615780 | 617713 |
| exon | 618332 | 618621 |
| exon | 618663 | 618816 |
| exon | 619100 | 619314 |
| exon | 620523 | 620640 |
| exon | 620848 | 621058 |
| exon | 621262 | 621323 |
| exon | 621413 | 621857 |
| CDS | 617549 | 617713 |
| CDS | 618332 | 618621 |
| CDS | 618663 | 618816 |
| CDS | 619100 | 619314 |
| CDS | 620523 | 620640 |
| CDS | 620848 | 621058 |
| CDS | 621262 | 621323 |
| CDS | 621413 | 621631 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00275.19 | EPSP_synthase | 26 | 471 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 414 Phenylalanine, tyrosine and tryptophan biosynthesis | 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] | K00800 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003866 | 3-phosphoshikimate 1-carboxyvinyltransferase activity |
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.