Annotation of co-expression genes

PH01000356G0220's details annotation

1.Annotation

ICBR annotation: WAX2, putative, expressed

Blast result AT1G02205 : 0.00E+00
Blast annotation: Fatty acid hydroxylase superfamily

2.Location

Scaffold: PH01000356
Strand: -

RegionStartEnd
gene137718141318
mRNA137718141318
exon137718138188
exon138284138457
exon138561138659
exon138764138964
exon139242139349
exon139482139857
exon140137140356
exon140436140668
exon140810141105
exon141155141318
CDS138003138188
CDS138284138457
CDS138561138659
CDS138764138964
CDS139242139349
CDS139482139857
CDS140137140356
CDS140436140668
CDS140810141105
CDS141155141214

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000689hydrolase activity, acting on ester bonds,
lipid metabolic process,
hydrolase activity,
RLK-Pelle_Extensin (from iTAK)
lipase activity,
lipid transport,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04116.12FA_hydroxylase157296
PF12076.7Wax2_C475638

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0006633fatty acid biosynthetic process
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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