PH01000356G1090's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT3G12560 : 1.50E-60
Blast annotation: TRF-like 9
2.Location
Scaffold: PH01000356
Strand: -
| Region | Start | End |
| gene | 662862 | 666728 |
| mRNA | 662862 | 666728 |
| exon | 662862 | 663162 |
| exon | 663463 | 663526 |
| exon | 663619 | 663921 |
| exon | 664102 | 664346 |
| exon | 664797 | 664876 |
| exon | 665216 | 665347 |
| exon | 665494 | 666728 |
| CDS | 662992 | 663162 |
| CDS | 663463 | 663526 |
| CDS | 663619 | 663921 |
| CDS | 664102 | 664346 |
| CDS | 664797 | 664876 |
| CDS | 665216 | 665347 |
| CDS | 665494 | 666358 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.