PH01000357G0230's details annotation
1.Annotation
ICBR annotation: ABC transporter family protein, putative, expressed
Blast result AT3G13080 : 0.00E+00
Blast annotation: multidrug resistance-associated protein 3
2.Location
Scaffold: PH01000357
Strand: -
| Region | Start | End |
| gene | 117109 | 126520 |
| mRNA | 117109 | 126520 |
| exon | 117109 | 118608 |
| exon | 118714 | 118953 |
| exon | 119076 | 119139 |
| exon | 119257 | 119562 |
| exon | 119767 | 119981 |
| exon | 122185 | 122479 |
| exon | 122553 | 122717 |
| exon | 122803 | 123444 |
| exon | 123528 | 123614 |
| exon | 123687 | 125628 |
| exon | 126330 | 126520 |
| CDS | 118499 | 118608 |
| CDS | 118714 | 118953 |
| CDS | 119076 | 119139 |
| CDS | 119257 | 119562 |
| CDS | 119767 | 119981 |
| CDS | 122185 | 122479 |
| CDS | 122553 | 122717 |
| CDS | 122803 | 123444 |
| CDS | 123528 | 123614 |
| CDS | 123687 | 125628 |
| CDS | 126330 | 126451 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00664.22 | ABC_membrane | 215 | 476 |
| PF00005.26 | ABC_tran | 541 | 675 |
| PF00664.22 | ABC_membrane | 833 | 1075 |
| PF00005.26 | ABC_tran | 1167 | 1315 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
| GO:0016887 | ATPase activity |
| GO:0017111 | nucleoside-triphosphatase activity |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.