PH01000360G0780's details annotation
1.Annotation
ICBR annotation: ribosomal protein S2, putative, expressed
Blast result AT3G04770 : 3.00E-107
Blast annotation: 40s ribosomal protein SA B
2.Location
Scaffold: PH01000360
Strand: +
| Region | Start | End |
| gene | 481536 | 484886 |
| mRNA | 481536 | 484886 |
| exon | 481536 | 481820 |
| exon | 482435 | 482697 |
| exon | 482786 | 482983 |
| exon | 483100 | 483301 |
| exon | 483837 | 484886 |
| CDS | 481670 | 481820 |
| CDS | 482435 | 482697 |
| CDS | 482786 | 482983 |
| CDS | 483100 | 483301 |
| CDS | 483837 | 483949 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00318.19 | Ribosomal_S2 | 24 | 119 |
| PF00318.19 | Ribosomal_S2 | 124 | 188 |
| PF16122.4 | 40S_SA_C | 208 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein SAe | ko03011 | K02998 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.