PH01000360G1030's details annotation
1.Annotation
ICBR annotation: zinc-finger protein, putative, expressed
Blast result AT1G19180 : 1.80E-27
Blast annotation: jasmonate-zim-domain protein 1
2.Location
Scaffold: PH01000360
Strand: -
| Region | Start | End |
| gene | 681300 | 683545 |
| mRNA | 681300 | 683545 |
| exon | 681300 | 681855 |
| exon | 681951 | 682349 |
| exon | 682866 | 683019 |
| exon | 683287 | 683545 |
| CDS | 681714 | 681855 |
| CDS | 681951 | 682349 |
| CDS | 682866 | 683019 |
| CDS | 683287 | 683362 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Tify |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06200.13 | tify | 96 | 128 |
| PF09425.9 | CCT_2 | 179 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | jasmonate ZIM domain-containing protein | ko04075 | K13464 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.