PH01000361G0550's details annotation
1.Annotation
ICBR annotation: glycine-rich protein, putative, expressed
Blast result AT3G07560 : 9.80E-34
Blast annotation: peroxin 13
2.Location
Scaffold: PH01000361
Strand: +
| Region | Start | End |
| gene | 429968 | 434287 |
| mRNA | 429968 | 434287 |
| exon | 429968 | 430823 |
| exon | 431703 | 431939 |
| exon | 432030 | 432361 |
| exon | 432938 | 433030 |
| exon | 433120 | 434287 |
| CDS | 430817 | 430823 |
| CDS | 431703 | 431939 |
| CDS | 432030 | 432361 |
| CDS | 432938 | 433030 |
| CDS | 433120 | 433308 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000846 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
| coexpression network | CFinderM001633 | TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Peroxisome | peroxin-13 | ko04146 | K13344 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.