PH01000363G0060's details annotation
1.Annotation
ICBR annotation: GTPase-activating protein, putative, expressed
Blast result AT5G54310 : 2.90E-97
Blast annotation: ARF-GAP domain 5
2.Location
Scaffold: PH01000363
Strand: -
| Region | Start | End |
| gene | 38034 | 44049 |
| mRNA | 38034 | 44049 |
| exon | 38034 | 38398 |
| exon | 38556 | 38611 |
| exon | 38702 | 38947 |
| exon | 39056 | 39234 |
| exon | 39393 | 39645 |
| exon | 40368 | 40566 |
| exon | 40669 | 40759 |
| exon | 40859 | 40913 |
| exon | 41479 | 41569 |
| exon | 42626 | 42684 |
| exon | 43350 | 44049 |
| CDS | 38242 | 38398 |
| CDS | 38556 | 38611 |
| CDS | 38702 | 38947 |
| CDS | 39056 | 39234 |
| CDS | 39393 | 39645 |
| CDS | 40368 | 40566 |
| CDS | 40669 | 40759 |
| CDS | 40859 | 40913 |
| CDS | 41479 | 41569 |
| CDS | 42626 | 42684 |
| CDS | 43350 | 43400 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001052 | RLK-Pelle_Extensin (from iTAK) CMGC_GSK (from iTAK) Endocytosis multicellular organismal development, regulation of ARF GTPase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01412.17 | ArfGap | 17 | 123 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | stromal membrane-associated protein | ko04144 | K12486 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008060 | ARF GTPase activator activity |
| GO:0008270 | zinc ion binding |
| GO:0032312 | regulation of ARF GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.