PH01000363G1010's details annotation
1.Annotation
ICBR annotation: HVA22, putative, expressed
Blast result AT4G36720 : 2.30E-47
Blast annotation: HVA22-like protein K
2.Location
Scaffold: PH01000363
Strand: -
| Region | Start | End |
| gene | 687590 | 694258 |
| mRNA | 687590 | 694258 |
| exon | 687590 | 687992 |
| exon | 688050 | 688122 |
| exon | 688216 | 688311 |
| exon | 688761 | 688823 |
| exon | 689350 | 689413 |
| exon | 691393 | 691444 |
| exon | 692052 | 692149 |
| exon | 692679 | 692737 |
| exon | 693826 | 694258 |
| CDS | 687943 | 687992 |
| CDS | 688050 | 688122 |
| CDS | 688216 | 688311 |
| CDS | 688761 | 688823 |
| CDS | 689350 | 689413 |
| CDS | 691393 | 691444 |
| CDS | 692052 | 692149 |
| CDS | 692679 | 692737 |
| CDS | 693826 | 693858 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03134.18 | TB2_DP1_HVA22 | 39 | 100 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.