Annotation of co-expression genes

PH01000369G0640's details annotation

1.Annotation

ICBR annotation: tetratricopeptide repeat containing protein, putative, expressed

Blast result AT1G17760 : 5.00E-125
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01000369
Strand: -

RegionStartEnd
gene430307435195
mRNA430307435195
exon430307431485
exon431525431645
exon431985432048
exon432371432417
exon433203433331
exon433602433742
exon433835433896
exon433989434089
exon434511434620
exon434758434820
exon434916435195
CDS431388431485
CDS431525431645
CDS431985432048
CDS432371432417
CDS433203433331
CDS433602433742
CDS433835433896
CDS433989434089
CDS434511434620
CDS434758434820
CDS434916434966

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
mRNA surveillance pathwaycleavage stimulation factor subunit 3ko03015K14408

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005622intracellular
GO:0006396RNA processing

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.