PH01000376G0220's details annotation
1.Annotation
ICBR annotation: lactate/malate dehydrogenase, putative, expressed
Blast result AT5G09660 : 2.00E-160
Blast annotation: peroxisomal NAD-malate dehydrogenase 2
2.Location
Scaffold: PH01000376
Strand: -
| Region | Start | End |
| gene | 176937 | 180425 |
| mRNA | 176937 | 180425 |
| exon | 176937 | 177020 |
| exon | 177132 | 177226 |
| exon | 177313 | 177402 |
| exon | 177483 | 177518 |
| exon | 178373 | 178456 |
| exon | 178574 | 178663 |
| exon | 178796 | 179110 |
| exon | 179930 | 180425 |
| CDS | 176948 | 177020 |
| CDS | 177132 | 177226 |
| CDS | 177313 | 177402 |
| CDS | 177483 | 177518 |
| CDS | 178373 | 178456 |
| CDS | 178574 | 178663 |
| CDS | 178796 | 179110 |
| CDS | 179930 | 180151 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000287 | thiamine biosynthetic process, Pyruvate_metabolism Carbon_fixation_in_photosynthetic_organisms iron-sulfur cluster binding, Zeatin_biosynthesis Thiamine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00056.22 | Ldh_1_N | 49 | 191 |
| PF02866.17 | Ldh_1_C | 193 | 356 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | malate dehydrogenase [EC:1.1.1.37] | ko00020 | K00026 |
| Pyruvate metabolism | malate dehydrogenase [EC:1.1.1.37] | ko00620 | K00026 |
| Glyoxylate and dicarboxylate metabolism | malate dehydrogenase [EC:1.1.1.37] | ko00630 | K00026 |
| Carbon fixation in photosynthetic organisms | malate dehydrogenase [EC:1.1.1.37] | ko00710 | K00026 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006108 | malate metabolic process |
| GO:0016491 | oxidoreductase activity |
| GO:0016615 | malate dehydrogenase activity |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0030060 | L-malate dehydrogenase activity |
| GO:0044262 | cellular carbohydrate metabolic process |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.