PH01000377G0570's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G27900 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01000377
Strand: +
| Region | Start | End |
| gene | 380274 | 393444 |
| mRNA | 380274 | 393444 |
| exon | 380274 | 380899 |
| exon | 380999 | 381151 |
| exon | 381235 | 381309 |
| exon | 381644 | 381722 |
| exon | 381884 | 382053 |
| exon | 382143 | 382232 |
| exon | 382505 | 382594 |
| exon | 383333 | 383422 |
| exon | 383687 | 383773 |
| exon | 384035 | 384118 |
| exon | 384233 | 384352 |
| exon | 384475 | 384503 |
| exon | 385287 | 385419 |
| exon | 386017 | 386460 |
| exon | 387027 | 387529 |
| exon | 387617 | 387680 |
| exon | 387807 | 387909 |
| exon | 388031 | 388203 |
| exon | 390457 | 390582 |
| exon | 390727 | 390797 |
| exon | 391011 | 391073 |
| exon | 391764 | 391836 |
| exon | 392054 | 392147 |
| exon | 392263 | 393444 |
| CDS | 380666 | 380899 |
| CDS | 380999 | 381151 |
| CDS | 381235 | 381309 |
| CDS | 381644 | 381722 |
| CDS | 381884 | 382053 |
| CDS | 382143 | 382232 |
| CDS | 382505 | 382594 |
| CDS | 383333 | 383422 |
| CDS | 383687 | 383773 |
| CDS | 384035 | 384118 |
| CDS | 384233 | 384352 |
| CDS | 384475 | 384503 |
| CDS | 385287 | 385419 |
| CDS | 386017 | 386460 |
| CDS | 387027 | 387529 |
| CDS | 387617 | 387680 |
| CDS | 387807 | 387909 |
| CDS | 388031 | 388203 |
| CDS | 390457 | 390582 |
| CDS | 390727 | 390797 |
| CDS | 391011 | 391073 |
| CDS | 391764 | 391836 |
| CDS | 392054 | 392147 |
| CDS | 392263 | 392273 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10475.8 | Vps54_N | 119 | 181 |
| PF10475.8 | Vps54_N | 208 | 297 |
| PF10475.8 | Vps54_N | 298 | 473 |
| PF10474.8 | DUF2451 | 904 | 1051 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.