PH01000377G0690's details annotation
1.Annotation
ICBR annotation: zinc finger Ran-binding domain-containing protein 2, putative, expressed
Blast result AT1G50300 : 5.00E-99
Blast annotation: TBP-associated factor 15
2.Location
Scaffold: PH01000377
Strand: -
| Region | Start | End |
| gene | 439834 | 444955 |
| mRNA | 439834 | 444955 |
| exon | 439834 | 440959 |
| exon | 441348 | 441396 |
| exon | 441867 | 441993 |
| exon | 442077 | 442155 |
| exon | 442593 | 442676 |
| exon | 443836 | 444018 |
| exon | 444131 | 444468 |
| exon | 444584 | 444955 |
| CDS | 440746 | 440959 |
| CDS | 441348 | 441396 |
| CDS | 441867 | 441993 |
| CDS | 442077 | 442155 |
| CDS | 442593 | 442676 |
| CDS | 443836 | 444018 |
| CDS | 444131 | 444468 |
| CDS | 444584 | 444703 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 15 | 92 |
| PF00641.17 | zf-RanBP | 144 | 173 |
| PF00641.17 | zf-RanBP | 209 | 235 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.