PH01000378G0150's details annotation
1.Annotation
ICBR annotation: 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Blast result AT5G03650 : 0.00E+00
Blast annotation: starch branching enzyme 2.2
2.Location
Scaffold: PH01000378
Strand: +
| Region | Start | End |
| gene | 80209 | 94480 |
| mRNA | 80209 | 94480 |
| exon | 80209 | 80474 |
| exon | 80826 | 80947 |
| exon | 81212 | 81483 |
| exon | 81922 | 82020 |
| exon | 82345 | 82443 |
| exon | 82540 | 82582 |
| exon | 82779 | 82838 |
| exon | 83268 | 83417 |
| exon | 83449 | 83565 |
| exon | 83903 | 83986 |
| exon | 84448 | 84468 |
| exon | 84844 | 84965 |
| exon | 85143 | 85262 |
| exon | 85550 | 85591 |
| exon | 88176 | 88305 |
| exon | 88394 | 88504 |
| exon | 88738 | 88866 |
| exon | 89489 | 89592 |
| exon | 90562 | 90706 |
| exon | 91813 | 91960 |
| exon | 92091 | 92191 |
| exon | 92354 | 92431 |
| exon | 92693 | 92848 |
| exon | 93160 | 93234 |
| exon | 93333 | 94480 |
| CDS | 80339 | 80474 |
| CDS | 80826 | 80947 |
| CDS | 81212 | 81483 |
| CDS | 81922 | 82020 |
| CDS | 82345 | 82443 |
| CDS | 82540 | 82582 |
| CDS | 82779 | 82838 |
| CDS | 83268 | 83417 |
| CDS | 83449 | 83565 |
| CDS | 83903 | 83986 |
| CDS | 84448 | 84468 |
| CDS | 84844 | 84965 |
| CDS | 85143 | 85262 |
| CDS | 85550 | 85591 |
| CDS | 88176 | 88305 |
| CDS | 88394 | 88504 |
| CDS | 88738 | 88866 |
| CDS | 89489 | 89592 |
| CDS | 90562 | 90706 |
| CDS | 91813 | 91960 |
| CDS | 92091 | 92191 |
| CDS | 92354 | 92431 |
| CDS | 92693 | 92848 |
| CDS | 93160 | 93234 |
| CDS | 93333 | 93419 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02922.17 | CBM_48 | 237 | 307 |
| PF00128.23 | Alpha-amylase | 416 | 480 |
| PF02806.17 | Alpha-amylase_C | 819 | 913 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] | ko00500 | K00700 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0043169 | cation binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.