PH01000379G0490's details annotation
1.Annotation
ICBR annotation: WAX2, putative, expressed
Blast result AT5G57800 : 0.00E+00
Blast annotation: Fatty acid hydroxylase superfamily
2.Location
Scaffold: PH01000379
Strand: -
| Region | Start | End |
| gene | 347479 | 353573 |
| mRNA | 347479 | 353573 |
| exon | 347479 | 349196 |
| exon | 349324 | 349530 |
| exon | 349664 | 349771 |
| exon | 349871 | 350124 |
| exon | 351156 | 351277 |
| exon | 352281 | 352500 |
| exon | 352604 | 352836 |
| exon | 352949 | 353169 |
| exon | 353302 | 353573 |
| CDS | 348756 | 349196 |
| CDS | 349324 | 349530 |
| CDS | 349664 | 349771 |
| CDS | 349871 | 350124 |
| CDS | 351156 | 351277 |
| CDS | 352281 | 352500 |
| CDS | 352604 | 352836 |
| CDS | 352949 | 353169 |
| CDS | 353302 | 353355 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04116.12 | FA_hydroxylase | 129 | 269 |
| PF12076.7 | Wax2_C | 448 | 618 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.