PH01000381G1020's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT4G35260 : 7.00E-167
Blast annotation: isocitrate dehydrogenase 1
2.Location
Scaffold: PH01000381
Strand: -
| Region | Start | End |
| gene | 718299 | 723695 |
| mRNA | 718299 | 723695 |
| exon | 718299 | 718796 |
| exon | 719168 | 719246 |
| exon | 719643 | 719882 |
| exon | 721635 | 723695 |
| CDS | 718522 | 718796 |
| CDS | 719168 | 719246 |
| CDS | 719643 | 719882 |
| CDS | 721635 | 722060 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00180.19 | Iso_dh | 42 | 364 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] | ko00020 | K00030 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0004449 | isocitrate dehydrogenase (NAD+) activity |
| GO:0006099 | tricarboxylic acid cycle |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0051287 | NAD binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.