PH01000383G0120's details annotation
1.Annotation
ICBR annotation: stomatin-like protein 2, putative, expressed
Blast result AT4G27585 : 6.00E-107
Blast annotation: SPFH/Band 7/PHB domain-containing membrane-associated protein family
2.Location
Scaffold: PH01000383
Strand: -
| Region | Start | End |
| gene | 117414 | 123814 |
| mRNA | 117414 | 123814 |
| exon | 117414 | 118811 |
| exon | 118893 | 118952 |
| exon | 119095 | 119186 |
| exon | 119680 | 119712 |
| exon | 119958 | 120050 |
| exon | 120126 | 120183 |
| exon | 120777 | 120926 |
| exon | 121162 | 121232 |
| exon | 121373 | 121436 |
| exon | 123276 | 123522 |
| exon | 123621 | 123814 |
| CDS | 118551 | 118811 |
| CDS | 118893 | 118952 |
| CDS | 119095 | 119186 |
| CDS | 119680 | 119712 |
| CDS | 119958 | 120050 |
| CDS | 120126 | 120183 |
| CDS | 120777 | 120926 |
| CDS | 121162 | 121232 |
| CDS | 121373 | 121436 |
| CDS | 123276 | 123522 |
| CDS | 123621 | 123745 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01145.24 | Band_7 | 56 | 225 |
| PF16200.4 | Band_7_C | 253 | 313 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.