PH01000388G0490's details annotation
1.Annotation
ICBR annotation: acetyl-CoA carboxylase, putative, expressed
Blast result AT1G36160 : 0
Blast annotation: acetyl-CoA carboxylase 1
2.Location
Scaffold: PH01000388
Strand: -
| Region | Start | End |
| gene | 400076 | 416908 |
| mRNA | 400076 | 416908 |
| exon | 400076 | 400628 |
| exon | 400854 | 403016 |
| exon | 403083 | 403262 |
| exon | 403523 | 403646 |
| exon | 403727 | 404079 |
| exon | 404166 | 404400 |
| exon | 404491 | 404771 |
| exon | 404977 | 405594 |
| exon | 406486 | 406734 |
| exon | 406827 | 406949 |
| exon | 407034 | 407111 |
| exon | 407339 | 407515 |
| exon | 407590 | 407679 |
| exon | 408083 | 408193 |
| exon | 408624 | 408812 |
| exon | 410154 | 410264 |
| exon | 410896 | 410982 |
| exon | 411073 | 411177 |
| exon | 411267 | 411323 |
| exon | 411396 | 411470 |
| exon | 411576 | 411692 |
| exon | 411807 | 411931 |
| exon | 412013 | 412052 |
| exon | 412206 | 412256 |
| exon | 412340 | 412527 |
| exon | 412602 | 412695 |
| exon | 412771 | 412944 |
| exon | 413038 | 413133 |
| exon | 413882 | 413974 |
| exon | 414087 | 414248 |
| exon | 414332 | 414538 |
| exon | 414636 | 414993 |
| exon | 415152 | 415262 |
| exon | 416098 | 416161 |
| exon | 416666 | 416908 |
| CDS | 400572 | 400628 |
| CDS | 400854 | 403016 |
| CDS | 403083 | 403262 |
| CDS | 403523 | 403646 |
| CDS | 403727 | 404079 |
| CDS | 404166 | 404400 |
| CDS | 404491 | 404771 |
| CDS | 404977 | 405594 |
| CDS | 406486 | 406734 |
| CDS | 406827 | 406949 |
| CDS | 407034 | 407111 |
| CDS | 407339 | 407515 |
| CDS | 407590 | 407679 |
| CDS | 408083 | 408193 |
| CDS | 408624 | 408812 |
| CDS | 410154 | 410264 |
| CDS | 410896 | 410982 |
| CDS | 411073 | 411177 |
| CDS | 411267 | 411323 |
| CDS | 411396 | 411470 |
| CDS | 411576 | 411692 |
| CDS | 411807 | 411931 |
| CDS | 412013 | 412052 |
| CDS | 412206 | 412256 |
| CDS | 412340 | 412527 |
| CDS | 412602 | 412695 |
| CDS | 412771 | 412944 |
| CDS | 413038 | 413133 |
| CDS | 413882 | 413974 |
| CDS | 414087 | 414248 |
| CDS | 414332 | 414538 |
| CDS | 414636 | 414993 |
| CDS | 415152 | 415262 |
| CDS | 416098 | 416161 |
| CDS | 416666 | 416879 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00289.21 | Biotin_carb_N | 172 | 291 |
| PF02786.16 | CPSase_L_D2 | 338 | 521 |
| PF02785.18 | Biotin_carb_C | 568 | 674 |
| PF08326.11 | ACC_central | 852 | 1183 |
| PF08326.11 | ACC_central | 1428 | 1731 |
| PF01039.21 | Carboxyl_trans | 1849 | 2402 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pyruvate metabolism | acetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14] | ko00620 | K11262 |
| Propanoate metabolism | acetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14] | ko00640 | K11262 |
| Fatty acid biosynthesis | acetyl-CoA carboxylase / biotin carboxylase [EC:6.4.1.2;EC:6.3.4.14] | ko00061 | K11262 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003989 | acetyl-CoA carboxylase activity |
| GO:0004075 | biotin carboxylase activity |
| GO:0005524 | ATP binding |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0008152 | metabolic process |
| GO:0016874 | ligase activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.