PH01000396G0230's details annotation
1.Annotation
ICBR annotation: RNA-dependent RNA polymerase, putative, expressed
Blast result AT3G49500 : 0.00E+00
Blast annotation: RNA-dependent RNA polymerase 6
2.Location
Scaffold: PH01000396
Strand: +
| Region | Start | End |
| gene | 221190 | 226959 |
| mRNA | 221190 | 226959 |
| exon | 221190 | 224263 |
| exon | 225695 | 226959 |
| CDS | 221510 | 224263 |
| CDS | 225695 | 226564 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05183.11 | RdRP | 430 | 1012 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0003968 | RNA-directed RNA polymerase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.