PH01000401G0680's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G53200 : 1.60E-26
Blast annotation: -
2.Location
Scaffold: PH01000401
Strand: +
| Region | Start | End |
| gene | 439166 | 448168 |
| mRNA | 439166 | 448168 |
| exon | 439166 | 442965 |
| exon | 443536 | 443615 |
| exon | 443725 | 444140 |
| exon | 444931 | 445115 |
| exon | 445561 | 445646 |
| exon | 445821 | 445828 |
| exon | 446561 | 446860 |
| exon | 447669 | 448168 |
| CDS | 442834 | 442965 |
| CDS | 443536 | 443615 |
| CDS | 443725 | 444140 |
| CDS | 444931 | 445115 |
| CDS | 445561 | 445646 |
| CDS | 445821 | 445828 |
| CDS | 446561 | 446860 |
| CDS | 447669 | 447865 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001080 | nucleocytoplasmic transport, small GTPase mediated signal transduction, GTP_catabolic_process protein transport, GTPase activity, signal transduction, GTP binding, intracellular protein transport, intracellular, membrane, |
| coexpression network | CFinderM001229 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis |
| coexpression network | CFinderM001408 | outer membrane, peptide-methionine-(S)-S-oxide reductase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14929.5 | TAF1_subA | 1 | 304 |
| PF14929.5 | TAF1_subA | 303 | 430 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.