Annotation of co-expression genes

PH01000404G0140's details annotation

1.Annotation

ICBR annotation: kinesin motor domain containing protein, expressed

Blast result AT3G43210 : 1.30E-94
Blast annotation: ATP binding microtubule motor family protein

2.Location

Scaffold: PH01000404
Strand: +

RegionStartEnd
gene98103101617
mRNA98103101617
exon9810399052
exon9915499243
exon9932699426
exon9955999672
exon9976699847
exon99962100029
exon100126100185
exon100741100822
exon100937100947
exon101094101153
exon101232101617
CDS9880699052
CDS9915499243
CDS9932699426
CDS9955999672
CDS9976699847
CDS99962100029
CDS100126100185
CDS100741100822
CDS100937100947
CDS101094101153
CDS101232101363

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin40244
PF00225.22Kinesin293336

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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