Annotation of co-expression genes

PH01000407G0510's details annotation

1.Annotation

ICBR annotation: serine threonine kinase, putative, expressed

Blast result AT5G61550 : 5.00E-180
Blast annotation: U-box domain-containing protein kinase family protein

2.Location

Scaffold: PH01000407
Strand: -

RegionStartEnd
gene355758362316
mRNA355758362316
exon355758356305
exon356385357137
exon357613358029
exon358117358209
exon358332358651
exon359195359391
exon360392360513
exon360601360722
exon361518362316
CDS356123356305
CDS356385357137
CDS357613358029
CDS358117358209
CDS358332358651
CDS359195359391
CDS360392360513
CDS360601360722
CDS361518361719

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00582.25Usp22156
PF07714.16Pkinase_Tyr453705
PF04564.14U-box734801

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000151ubiquitin ligase complex
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0004842ubiquitin-protein ligase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0006950response to stress
GO:0016567protein ubiquitination
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.