PH01000407G0960's details annotation
1.Annotation
ICBR annotation: myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
Blast result AT1G08510 : 5.00E-141
Blast annotation: fatty acyl-ACP thioesterases B
2.Location
Scaffold: PH01000407
Strand: +
| Region | Start | End |
| gene | 710195 | 716398 |
| mRNA | 710195 | 716398 |
| exon | 710195 | 711696 |
| exon | 711803 | 711936 |
| exon | 713445 | 713558 |
| exon | 713669 | 713855 |
| exon | 713950 | 714018 |
| exon | 714249 | 716398 |
| CDS | 711196 | 711696 |
| CDS | 711803 | 711936 |
| CDS | 713445 | 713558 |
| CDS | 713669 | 713855 |
| CDS | 713950 | 714018 |
| CDS | 714249 | 714515 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12590.7 | Acyl-thio_N | 1 | 126 |
| PF01643.16 | Acyl-ACP_TE | 137 | 405 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid biosynthesis | fatty acyl-ACP thioesterase B [EC:3.1.2.14;EC:3.1.2.-] | ko00061 | K10781 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0016790 | thiolester hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.