PH01000411G0500's details annotation
1.Annotation
ICBR annotation: beta 1,2-xylosyltransferase, putative, expressed
Blast result AT5G55500 : 1.00E-147
Blast annotation: beta-1,2-xylosyltransferase
2.Location
Scaffold: PH01000411
Strand: -
| Region | Start | End |
| gene | 390943 | 397163 |
| mRNA | 390943 | 397163 |
| exon | 390943 | 392728 |
| exon | 393871 | 393891 |
| exon | 393935 | 394084 |
| exon | 395997 | 396064 |
| exon | 396360 | 397163 |
| CDS | 392009 | 392728 |
| CDS | 393871 | 393891 |
| CDS | 393935 | 394084 |
| CDS | 395997 | 396064 |
| CDS | 396360 | 396966 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT61 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04577.13 | DUF563 | 243 | 499 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Various types of N-glycan biosynthesis | glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38] | ko00513 | K03714 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.