PH01000411G0770's details annotation
1.Annotation
ICBR annotation: SWIB/MDM2 domain containing protein, expressed
Blast result AT4G22360 : 4.50E-68
Blast annotation: SWIB complex BAF60b domain-containing protein
2.Location
Scaffold: PH01000411
Strand: -
| Region | Start | End |
| gene | 539458 | 543594 |
| mRNA | 539458 | 543594 |
| exon | 539458 | 539855 |
| exon | 541153 | 541349 |
| exon | 541433 | 541604 |
| exon | 541695 | 541806 |
| exon | 542995 | 543594 |
| CDS | 539724 | 539855 |
| CDS | 541153 | 541349 |
| CDS | 541433 | 541604 |
| CDS | 541695 | 541806 |
| CDS | 542995 | 543392 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SWI/SNF-BAF60b |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02201.17 | SWIB | 151 | 221 |
| PF02201.17 | SWIB | 259 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.