PH01000416G0980's details annotation
1.Annotation
ICBR annotation: relA-SpoT like protein RSH1, putative, expressed
Blast result AT4G02260 : 0.00E+00
Blast annotation: RELA/SPOT homolog 1
2.Location
Scaffold: PH01000416
Strand: +
| Region | Start | End |
| gene | 585729 | 597472 |
| mRNA | 585729 | 597472 |
| exon | 585729 | 585788 |
| exon | 586618 | 587266 |
| exon | 588181 | 588366 |
| exon | 589183 | 589248 |
| exon | 589377 | 589469 |
| exon | 589573 | 589704 |
| exon | 589817 | 589918 |
| exon | 590014 | 590091 |
| exon | 590167 | 590238 |
| exon | 591160 | 591267 |
| exon | 591347 | 591444 |
| exon | 591969 | 592029 |
| exon | 592143 | 592205 |
| exon | 592285 | 592341 |
| exon | 592426 | 592527 |
| exon | 592640 | 592798 |
| exon | 592921 | 593052 |
| exon | 593126 | 593212 |
| exon | 593284 | 593355 |
| exon | 595886 | 596336 |
| exon | 596654 | 596715 |
| exon | 596934 | 597002 |
| exon | 597089 | 597472 |
| CDS | 585772 | 585788 |
| CDS | 586618 | 587266 |
| CDS | 588181 | 588366 |
| CDS | 589183 | 589248 |
| CDS | 589377 | 589469 |
| CDS | 589573 | 589704 |
| CDS | 589817 | 589918 |
| CDS | 590014 | 590091 |
| CDS | 590167 | 590238 |
| CDS | 591160 | 591267 |
| CDS | 591347 | 591444 |
| CDS | 591969 | 592029 |
| CDS | 592143 | 592205 |
| CDS | 592285 | 592341 |
| CDS | 592426 | 592527 |
| CDS | 592640 | 592798 |
| CDS | 592921 | 593052 |
| CDS | 593126 | 593212 |
| CDS | 593284 | 593355 |
| CDS | 595886 | 596336 |
| CDS | 596654 | 596715 |
| CDS | 596934 | 597002 |
| CDS | 597089 | 597181 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000637 | guanosine tetraphosphate metabolic process, carotenoid biosynthetic process, Carotenoid_biosynthesis Purine_metabolism |
| coexpression network | CFinderM000837 | glutamyl-tRNA aminoacylation, guanosine tetraphosphate metabolic process, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism glutamate-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA binding, tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13328.5 | HD_4 | 304 | 461 |
| PF04607.16 | RelA_SpoT | 530 | 646 |
| PF02824.20 | TGS | 717 | 776 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0015969 | guanosine tetraphosphate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.