Annotation of co-expression genes

PH01000417G0610's details annotation

1.Annotation

ICBR annotation: FAD dependent oxidoreductase domain containing protein, expressed

Blast result AT5G49555 : 0.00E+00
Blast annotation: FAD/NAD(P)-binding oxidoreductase family protein

2.Location

Scaffold: PH01000417
Strand: +

RegionStartEnd
gene357099368181
mRNA357099368181
exon357099358949
exon359106359267
exon359416359598
exon359699359756
exon359914359964
exon360044360126
exon360489360576
exon360812360856
exon360933361007
exon361114361182
exon361601361716
exon362257362369
exon362614362693
exon362906363026
exon363127363193
exon363315363388
exon364928365023
exon365977366032
exon366384366492
exon367433367599
exon367849368181
CDS358645358949
CDS359106359267
CDS359416359598
CDS359699359756
CDS359914359964
CDS360044360126
CDS360489360576
CDS360812360856
CDS360933361007
CDS361114361182
CDS361601361716
CDS362257362369
CDS362614362693
CDS362906363026
CDS363127363193
CDS363315363388
CDS364928365023
CDS365977366032
CDS366384366492
CDS367433367599
CDS367849368124

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000900phosphopyruvate hydratase complex,
glycolysis,
phosphopyruvate hydratase activity,
Alanine,_aspartate_and_glutamate_metabolism
TKL-Pl-6 (from iTAK)
magnesium ion binding,
argininosuccinate synthase activity,
6-phosphofructokinase complex,
arginine biosynthetic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01266.23DAO37342

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.