Annotation of co-expression genes

PH01000417G0950's details annotation

1.Annotation

ICBR annotation: rab geranylgeranyl transferase like protein, putative, expressed

Blast result AT4G24490 : 8.70E-39
Blast annotation: RAB geranylgeranyl transferase alpha subunit 1

2.Location

Scaffold: PH01000417
Strand: +

RegionStartEnd
gene552619560925
mRNA552619560925
exon552619553917
exon555557555716
exon555813555979
exon556049556153
exon557490557756
exon557917558025
exon558742558919
exon559155559308
exon560118560206
exon560438560925
CDS553784553917
CDS555557555716
CDS555813555979
CDS556049556153
CDS557490557756
CDS557917558025
CDS558742558919
CDS559155559308
CDS560118560206
CDS560438560829

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipphe-miR171g  
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01239.21PPTA95122
PF01239.21PPTA132156
PF01239.21PPTA167189
PF13516.5LRR_6405417
PF13516.5LRR_6486498

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008318protein prenyltransferase activity
GO:0018342protein prenylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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