PH01000428G0790's details annotation
1.Annotation
ICBR annotation: DNA repair protein Rad51, putative, expressed
Blast result AT2G28560 : 1.40E-64
Blast annotation: DNA repair (Rad51) family protein
2.Location
Scaffold: PH01000428
Strand: +
| Region | Start | End |
| gene | 523266 | 526027 |
| mRNA | 523266 | 526027 |
| exon | 523266 | 523566 |
| exon | 523644 | 523757 |
| exon | 524035 | 524184 |
| exon | 524864 | 524967 |
| exon | 525054 | 525117 |
| exon | 525264 | 525319 |
| exon | 525599 | 526027 |
| CDS | 523483 | 523566 |
| CDS | 523644 | 523757 |
| CDS | 524035 | 524184 |
| CDS | 524864 | 524967 |
| CDS | 525054 | 525117 |
| CDS | 525264 | 525319 |
| CDS | 525599 | 525683 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08423.10 | Rad51 | 83 | 215 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Homologous recombination | RAD51-like protein 1 | ko03440 | K10869 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005524 | ATP binding |
| GO:0006259 | DNA metabolic process |
| GO:0008094 | DNA-dependent ATPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.