PH01000435G0420's details annotation
1.Annotation
ICBR annotation: phosphatidylinositol transfer, putative, expressed
Blast result AT1G55690 : 2.00E-130
Blast annotation: Sec14p-like phosphatidylinositol transfer family protein
2.Location
Scaffold: PH01000435
Strand: +
| Region | Start | End |
| gene | 254228 | 260339 |
| mRNA | 254228 | 260339 |
| exon | 254228 | 256302 |
| exon | 256409 | 256508 |
| exon | 256607 | 256873 |
| exon | 256971 | 257048 |
| exon | 257129 | 257230 |
| exon | 257316 | 257365 |
| exon | 257484 | 257583 |
| exon | 257982 | 258080 |
| exon | 258175 | 258294 |
| exon | 258407 | 258569 |
| exon | 259328 | 259692 |
| exon | 260008 | 260085 |
| exon | 260217 | 260339 |
| CDS | 256010 | 256302 |
| CDS | 256409 | 256508 |
| CDS | 256607 | 256873 |
| CDS | 256971 | 257048 |
| CDS | 257129 | 257230 |
| CDS | 257316 | 257365 |
| CDS | 257484 | 257583 |
| CDS | 257982 | 258080 |
| CDS | 258175 | 258294 |
| CDS | 258407 | 258569 |
| CDS | 259328 | 259692 |
| CDS | 260008 | 260085 |
| CDS | 260217 | 260237 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03765.14 | CRAL_TRIO_N | 90 | 115 |
| PF00650.19 | CRAL_TRIO | 143 | 306 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.