Annotation of co-expression genes

PH01000436G0130's details annotation

1.Annotation

ICBR annotation: cytochrome P450, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000436
Strand: -

RegionStartEnd
gene108716114659
mRNA108716114659
exon108716108844
exon108944109110
exon109602109751
exon110114110264
exon111382111468
exon111769112410
exon112582112781
exon113245113340
exon114205114659
CDS108737108844
CDS108944109110
CDS109602109751
CDS110114110264
CDS111382111468
CDS111769112410
CDS112582112781
CDS113245113340
CDS114205114487

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001397GT4 GlycosylTransferases
coexpression networkCFinderM001443Fatty_acid_biosynthesis
3-oxoacyl-[acyl-carrier-protein] synthase activity,
translational termination,
mRNA_surveillance_pathway
translation release factor activity, codon specific,
lipid biosynthetic process,
coexpression networkCFinderM001498mTERF Transcription_Regulator(from iTAK)
coexpression networkCFinderM001788protein folding,
protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00067.21p450122438
PF00067.21p450436598

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0009055electron carrier activity
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037heme binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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