Annotation of co-expression genes

PH01000439G0750's details annotation

1.Annotation

ICBR annotation: transketolase, chloroplast precursor, putative, expressed

Blast result AT3G60750 : 0.00E+00
Blast annotation: Transketolase

2.Location

Scaffold: PH01000439
Strand: +

RegionStartEnd
gene488472492043
mRNA488472492043
exon488472489357
exon489776489866
exon489969490074
exon490160490442
exon490519490667
exon490758490911
exon490998492043
CDS488878489357
CDS489776489866
CDS489969490074
CDS490160490442
CDS490519490667
CDS490758490911
CDS490998491954

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00456.20Transketolase_N82413
PF02779.23Transket_pyr431602
PF02780.19Transketolase_C626732

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Biosynthesis of ansamycinstransketolase [EC:2.2.1.1]ko01051K00615
Pentose phosphate pathwaytransketolase [EC:2.2.1.1]ko00030K00615
Carbon fixation in photosynthetic organismstransketolase [EC:2.2.1.1]ko00710K00615

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004802transketolase activity
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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