PH01000441G0550's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT5G40382 : 1.20E-15
Blast annotation: Cytochrome c oxidase subunit Vc family protein
2.Location
Scaffold: PH01000441
Strand: -
| Region | Start | End |
| gene | 383265 | 393609 |
| mRNA | 383265 | 393609 |
| exon | 383265 | 383808 |
| exon | 384984 | 385097 |
| exon | 385549 | 385663 |
| exon | 386304 | 387152 |
| exon | 387997 | 388107 |
| exon | 389397 | 389440 |
| exon | 389600 | 389778 |
| exon | 390867 | 391003 |
| exon | 391552 | 391615 |
| exon | 391661 | 391770 |
| exon | 392314 | 392537 |
| exon | 392819 | 392902 |
| exon | 393301 | 393609 |
| CDS | 383543 | 383808 |
| CDS | 384984 | 385097 |
| CDS | 385549 | 385663 |
| CDS | 386304 | 387152 |
| CDS | 387997 | 388107 |
| CDS | 389397 | 389440 |
| CDS | 389600 | 389778 |
| CDS | 390867 | 391003 |
| CDS | 391552 | 391615 |
| CDS | 391661 | 391770 |
| CDS | 392314 | 392537 |
| CDS | 392819 | 392902 |
| CDS | 393301 | 393418 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00582.25 | Usp | 251 | 293 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006950 | response to stress |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.