PH01000442G0280's details annotation
1.Annotation
ICBR annotation: bifunctional thioredoxin reductase/thioredoxin, putative, expressed
Blast result AT2G41680 : 0.00E+00
Blast annotation: NADPH-dependent thioredoxin reductase C
2.Location
Scaffold: PH01000442
Strand: +
| Region | Start | End |
| gene | 148769 | 156317 |
| mRNA | 148769 | 156317 |
| exon | 148769 | 150139 |
| exon | 150306 | 150519 |
| exon | 150615 | 150720 |
| exon | 151106 | 151371 |
| exon | 151856 | 151894 |
| exon | 151953 | 152232 |
| exon | 152523 | 152630 |
| exon | 153108 | 153194 |
| exon | 153360 | 153384 |
| exon | 154716 | 154768 |
| exon | 155046 | 155176 |
| exon | 156117 | 156317 |
| CDS | 149950 | 150139 |
| CDS | 150306 | 150519 |
| CDS | 150615 | 150720 |
| CDS | 151106 | 151371 |
| CDS | 151856 | 151894 |
| CDS | 151953 | 152232 |
| CDS | 152523 | 152630 |
| CDS | 153108 | 153194 |
| CDS | 153360 | 153384 |
| CDS | 154716 | 154768 |
| CDS | 155046 | 155176 |
| CDS | 156117 | 156177 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07992.13 | Pyr_redox_2 | 71 | 379 |
| PF00085.19 | Thioredoxin | 457 | 517 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Selenocompound metabolism | thioredoxin reductase (NADPH) [EC:1.8.1.9] | ko00450 | K00384 |
| Pyrimidine metabolism | thioredoxin reductase (NADPH) [EC:1.8.1.9] | ko00240 | K00384 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004791 | thioredoxin-disulfide reductase activity |
| GO:0005737 | cytoplasm |
| GO:0016491 | oxidoreductase activity |
| GO:0019430 | removal of superoxide radicals |
| GO:0045454 | cell redox homeostasis |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.