PH01000445G0620's details annotation
1.Annotation
ICBR annotation: CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT5G26751 : 9.00E-151
Blast annotation: shaggy-related kinase 11
2.Location
Scaffold: PH01000445
Strand: +
| Region | Start | End |
| gene | 443140 | 447415 |
| mRNA | 443140 | 447415 |
| exon | 443140 | 443445 |
| exon | 443515 | 443607 |
| exon | 443766 | 443825 |
| exon | 443939 | 444211 |
| exon | 444306 | 444380 |
| exon | 444828 | 445100 |
| exon | 445195 | 445269 |
| exon | 445516 | 445656 |
| exon | 445744 | 445794 |
| exon | 445873 | 445968 |
| exon | 446048 | 446131 |
| exon | 446300 | 446402 |
| exon | 446501 | 447415 |
| CDS | 443329 | 443445 |
| CDS | 443515 | 443607 |
| CDS | 443766 | 443825 |
| CDS | 443939 | 444211 |
| CDS | 444306 | 444380 |
| CDS | 444828 | 445100 |
| CDS | 445195 | 445269 |
| CDS | 445516 | 445656 |
| CDS | 445744 | 445794 |
| CDS | 445873 | 445968 |
| CDS | 446048 | 446131 |
| CDS | 446300 | 446402 |
| CDS | 446501 | 446583 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 75 | 207 |
| PF00069.24 | Pkinase | 209 | 455 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.