PH01000449G0020's details annotation
1.Annotation
ICBR annotation: 30S ribosomal protein S31, chloroplast precursor, putative, expressed
Blast result AT2G38140 : 4.70E-15
Blast annotation: plastid-specific ribosomal protein 4
2.Location
Scaffold: PH01000449
Strand: +
| Region | Start | End |
| gene | 7401 | 9446 |
| mRNA | 7401 | 9446 |
| exon | 7401 | 7813 |
| exon | 8222 | 8302 |
| exon | 8488 | 8552 |
| exon | 8624 | 9446 |
| CDS | 7633 | 7813 |
| CDS | 8222 | 8302 |
| CDS | 8488 | 8552 |
| CDS | 8624 | 8755 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17067.4 | RPS31 | 24 | 107 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.