Gene details

Annotation of co-expression genes

PH01000454G1000's details annotation

1.Annotation

ICBR annotation: cullin, putative, expressed

Blast result AT4G02570 : 0.00E+00
Blast annotation: cullin 1

2.Location

Scaffold: PH01000454
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000535	GT37 GlycosylTransferases CMGC_MAPK (from iTAK)
coexpression network	CFinderM000566	cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, ubiquitin-dependent protein catabolic process, peroxisome organization, integral_component_of_peroxisomal_membrane PHD Transcription_Regulator(from iTAK) bZIP Transcription_Regulator(from PlantTFDB)
coexpression network	CFinderM001853	peroxisome organization, integral_component_of_peroxisomal_membrane cullin-RING ubiquitin ligase complex, bZIP Transcription_Regulator(from PlantTFDB)

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Protein processing in endoplasmic reticulum	cullin 1	ko04141	K03347
Ubiquitin mediated proteolysis	cullin 1	ko04120	K03347

10.Gene Ontology

GO Accession	GO Annotation
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0031461	cullin-RING ubiquitin ligase complex
GO:0031625	ubiquitin protein ligase binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.