PH01000457G0960's details annotation
1.Annotation
ICBR annotation: STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Blast result AT1G53570 : 4.20E-91
Blast annotation: mitogen-activated protein kinase kinase kinase 3
2.Location
Scaffold: PH01000457
Strand: +
| Region | Start | End |
| gene | 657686 | 662804 |
| mRNA | 657686 | 662804 |
| exon | 657686 | 658379 |
| exon | 659055 | 659522 |
| exon | 659816 | 659903 |
| exon | 660059 | 660121 |
| exon | 660989 | 661149 |
| exon | 661227 | 661302 |
| exon | 661751 | 661810 |
| exon | 662167 | 662409 |
| exon | 662471 | 662804 |
| CDS | 657946 | 658379 |
| CDS | 659055 | 659522 |
| CDS | 659816 | 659903 |
| CDS | 660059 | 660121 |
| CDS | 660989 | 661149 |
| CDS | 661227 | 661302 |
| CDS | 661751 | 661810 |
| CDS | 662167 | 662409 |
| CDS | 662471 | 662575 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000973 | STE_STE11 (from iTAK) protein import into nucleus, RNA_degradation phospholipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 282 | 451 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.