PH01000462G0040's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT4G38120 : 2.00E-171
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000462
Strand: +
| Region | Start | End |
| gene | 31940 | 47466 |
| mRNA | 31940 | 47466 |
| exon | 31940 | 32190 |
| exon | 32762 | 32937 |
| exon | 35585 | 35677 |
| exon | 36141 | 36313 |
| exon | 37563 | 37833 |
| exon | 38172 | 38239 |
| exon | 38319 | 38388 |
| exon | 38485 | 38805 |
| exon | 39402 | 39481 |
| exon | 39562 | 39613 |
| exon | 40181 | 40334 |
| exon | 41414 | 41548 |
| exon | 41898 | 41920 |
| exon | 42422 | 42604 |
| exon | 43183 | 43434 |
| exon | 43778 | 43873 |
| exon | 43957 | 44051 |
| exon | 44154 | 44217 |
| exon | 44315 | 44402 |
| exon | 44488 | 44558 |
| exon | 44757 | 44842 |
| exon | 44926 | 45010 |
| exon | 45313 | 45386 |
| exon | 46063 | 46169 |
| exon | 46462 | 46580 |
| exon | 46668 | 46745 |
| exon | 47129 | 47466 |
| CDS | 32136 | 32190 |
| CDS | 32762 | 32937 |
| CDS | 35585 | 35677 |
| CDS | 36141 | 36313 |
| CDS | 37563 | 37833 |
| CDS | 38172 | 38239 |
| CDS | 38319 | 38388 |
| CDS | 38485 | 38805 |
| CDS | 39402 | 39481 |
| CDS | 39562 | 39613 |
| CDS | 40181 | 40334 |
| CDS | 41414 | 41548 |
| CDS | 41898 | 41920 |
| CDS | 42422 | 42604 |
| CDS | 43183 | 43434 |
| CDS | 43778 | 43873 |
| CDS | 43957 | 44051 |
| CDS | 44154 | 44217 |
| CDS | 44315 | 44402 |
| CDS | 44488 | 44558 |
| CDS | 44757 | 44842 |
| CDS | 44926 | 45010 |
| CDS | 45313 | 45386 |
| CDS | 46063 | 46169 |
| CDS | 46462 | 46580 |
| CDS | 46668 | 46745 |
| CDS | 47129 | 47359 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001691 | Spliceosome Rab GTPase activator activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13251.5 | DUF4042 | 399 | 529 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.