PH01000465G0110's details annotation
1.Annotation
ICBR annotation: pyruvate decarboxylase isozyme 2, putative, expressed
Blast result AT4G33070 : 0.00E+00
Blast annotation: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
2.Location
Scaffold: PH01000465
Strand: -
| Region | Start | End |
| gene | 81803 | 86231 |
| mRNA | 81803 | 86231 |
| exon | 81803 | 83660 |
| exon | 83750 | 83938 |
| exon | 84037 | 84154 |
| exon | 84238 | 84888 |
| exon | 85287 | 85450 |
| exon | 85557 | 86231 |
| CDS | 83490 | 83660 |
| CDS | 83750 | 83938 |
| CDS | 84037 | 84154 |
| CDS | 84238 | 84888 |
| CDS | 85287 | 85450 |
| CDS | 85557 | 86090 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02776.17 | TPP_enzyme_N | 48 | 217 |
| PF00205.21 | TPP_enzyme_M | 245 | 349 |
| PF02775.20 | TPP_enzyme_C | 454 | 579 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | pyruvate decarboxylase [EC:4.1.1.1] | ko00010 | K01568 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0003824 | catalytic activity |
| GO:0030976 | thiamine pyrophosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.