PH01000477G0600's details annotation
1.Annotation
ICBR annotation: D-mannose binding lectin family protein
Blast result AT2G19130 : 8.00E-178
Blast annotation: S-locus lectin protein kinase family protein
2.Location
Scaffold: PH01000477
Strand: -
| Region | Start | End |
| gene | 443428 | 447395 |
| mRNA | 443428 | 447395 |
| exon | 443428 | 445468 |
| exon | 445503 | 445886 |
| exon | 446048 | 447395 |
| CDS | 444611 | 445468 |
| CDS | 445503 | 445886 |
| CDS | 446048 | 447064 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01453.23 | B_lectin | 68 | 185 |
| PF00954.19 | S_locus_glycop | 217 | 325 |
| PF00069.24 | Pkinase | 468 | 728 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
| GO:0048544 | recognition of pollen |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.