Annotation of co-expression genes

PH01000478G0830's details annotation

1.Annotation

ICBR annotation: 40S ribosomal protein S15a, putative, expressed

Blast result AT5G59850 : 1.80E-70
Blast annotation: Ribosomal protein S8 family protein

2.Location

Scaffold: PH01000478
Strand: -

RegionStartEnd
gene536548537502
mRNA536548537502
exon536548536777
exon536927537087
exon537164537502
CDS536679536777
CDS536927537087
CDS537164537296

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00410.18Ribosomal_S87130

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosomesmall subunit ribosomal protein S15Aeko03011K02957

10.Gene Ontology

GO AccessionGO Annotation
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0006412translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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