PH01000484G0350's details annotation
1.Annotation
ICBR annotation: CS domain containing protein, putative, expressed
Blast result AT5G53400 : 5.80E-75
Blast annotation: HSP20-like chaperones superfamily protein
2.Location
Scaffold: PH01000484
Strand: +
| Region | Start | End |
| gene | 253181 | 256296 |
| mRNA | 253181 | 256296 |
| exon | 253181 | 253774 |
| exon | 254662 | 254834 |
| exon | 254978 | 255026 |
| exon | 255138 | 255304 |
| exon | 255408 | 255491 |
| exon | 255577 | 256296 |
| CDS | 253345 | 253774 |
| CDS | 254662 | 254834 |
| CDS | 254978 | 255026 |
| CDS | 255138 | 255304 |
| CDS | 255408 | 255491 |
| CDS | 255577 | 255615 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04969.15 | CS | 155 | 229 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.